Pierre Tuffery: search on Z-Library

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1

A fast method for large-scale De Novo peptide and miniprotein structure prediction

Julien Maupetit, Philippe Derreumaux, Pierre Tufféry

Journal:

Journal of Computational Chemistry

Year:

2010

Language:

english

File:

PDF, 631 KB

english, 2010

2

PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex

Lamiable, Alexis, Thévenet, Pierre, Rey, Julien, Vavrusa, Marek, Derreumaux, Philippe, Tufféry, Pierre

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.23 MB

english, 2016

3

In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1

Laurent, Marie-Amandine, Bonnier, Dominique, Théret, Nathalie, Tufféry, Pierre, Moroy, Gautier

Journal:

Computational Biology and Chemistry

Year:

2016

Language:

english

File:

PDF, 869 KB

english, 2016

4

Progress with peptide scanning to study structure-activity relationships: the implications for drug discovery

Eustache, Stéphanie, Leprince, Jérôme, Tufféry, Pierre

Journal:

Expert Opinion on Drug Discovery

Year:

2016

Language:

english

File:

PDF, 970 KB

english, 2016

5

A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major

Catharina, Larissa, Lima, Carlyle Ribeiro, Franca, Alexander, Ramos Guimarães, Ana Carolina, Alves-Ferreira, Marcelo, Tuffery, Pierre, Derreumaux, Philippe, Carels, Nicolas

Journal:

Bioinformatics and Biology Insights

Year:

2017

Language:

english

File:

PDF, 1.40 MB

english, 2017

6

Corrigendum to “Cloning and modeling of CD8 β in the amphibian ambystoma Mexicanum. Evolutionary conserved structures for interactions with major histocompatibility complex (MHC) class I molecules”[Gene 288 (2002) 95–102]

Julien S Fellah, Pierre Tuffèry, Catherine Etchebest, Françoise Guillet, Jacques Charlemagne

Journal:

Year:

2003

File:

PDF, 43 KB

2003

7

Cloning and modeling of CD8 β in the amphibian ambystoma Mexicanum. Evolutionary conserved structures for interactions with major histocompatibility complex (MHC) class I molecules

Julien S. Fellah, Pierre Tuffèry, Catherine Etchebest, Françoise Guillet, Jacques Charlemagne

Journal:

Year:

2002

Language:

english

File:

PDF, 369 KB

english, 2002

8

Accessing external innovation in drug discovery and development

Tufféry, Pierre

Journal:

Expert Opinion on Drug Discovery

Year:

2015

Language:

english

File:

PDF, 497 KB

english, 2015

9

MTiOpenScreen: a web server for structure-based virtual screening

Labbé, Céline M., Rey, Julien, Lagorce, David, Vavruša, Marek, Becot, Jérome, Sperandio, Olivier, Villoutreix, Bruno O., Tufféry, Pierre, Miteva, Maria A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.29 MB

english, 2015

10

Identification of peptides interfering with the LRRK2/PP1 interaction

Dong, Chang Zhi, Bruzzoni-Giovanelli, Heriberto, Yu, Yanhua, Dorgham, Karim, Parizot, Christophe, Zini, Jean Marc, Brossas, Jean Yves, Tuffery, Pierre, Rebollo, Angelita, Xia, Houhui

Journal:

Year:

2020

File:

PDF, 2.71 MB

2020

11

Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm

Pierre Tuffery, Philippe Derreumaux

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 284 KB

english, 2005

12

HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling: Fig. 1.

Yu, Jinchao, Picord, Geraldine, Tuffery, Pierre, Guerois, Raphael

Journal:

Year:

2015

Language:

english

File:

PDF, 182 KB

english, 2015

13

Improved greedy algorithm for protein structure reconstruction

Pierre Tuffery, Frédéric Guyon, Philippe Derreumaux

Journal:

Journal of Computational Chemistry

Year:

2005

Language:

english

File:

PDF, 215 KB

english, 2005

14

[IEEE 2007 IEEE Congress on Services (Services 2007) - Salt Lake City, UT, USA (2007.07.9-2007.07.13)] 2007 IEEE Congress on Services (Services 2007) - Bioinformatics Services Discovery Using Ontology Classification

Menager, Herve, Lacroix, Zoe, Tuffery, Pierre

Year:

2007

Language:

english

File:

PDF, 328 KB

english, 2007

15

Restriction map construction using a ‘complete sentences compatibility’ algorithm

Tuffery, Pierre, Dessen, Philippe, Mugnier, Claude, Hazout, Serge

Journal:

Year:

1988

Language:

english

File:

PDF, 714 KB

english, 1988

16

Lack of Evidence for Connexin 43 Gene Mutations in Human Autosomal Recessive Lateralization Defects

Sophie Debrus, Sylvie Tuffery, Rumiko Matsuoka, Omar Galal, Pierre Sarda, Ursula Sauer, André Bozio, Bahriye Tanman, Annick Toutain, Mireille Claustres, Denis Le Paslier, Patrice Bouvagnet

Journal:

Journal of Molecular and Cellular Cardiology

Year:

1997

Language:

english

File:

PDF, 1.26 MB

english, 1997

17

Genotype–phenotype analysis in 2,405 patients with a dystrophinopathy using the UMD–DMD database: a model of nationwide knowledgebase

Sylvie Tuffery-Giraud, Christophe Béroud, France Leturcq, Rabah Ben Yaou, Dalil Hamroun, Laurence Michel-Calemard, Marie-Pierre Moizard, Rafaëlle Bernard, Mireille Cossée, Pierre Boisseau, Martine Bla

Journal:

Year:

2009

Language:

english

File:

PDF, 389 KB

english, 2009

18

The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems

Sterpone, Fabio, Melchionna, Simone, Tuffery, Pierre, Pasquali, Samuela, Mousseau, Normand, Cragnolini, Tristan, Chebaro, Yassmine, St-Pierre, Jean-Francois, Kalimeri, Maria, Barducci, Alessandro, Lau

Journal:

Chemical Society Reviews

Year:

2014

Language:

english

File:

PDF, 3.62 MB

english, 2014

19

Detecting Protein Candidate Fragments Using a Structural Alphabet Profile Comparison Approach

Shen, Yimin, Picord, Géraldine, Guyon, Frédéric, Tuffery, Pierre, Kleinjung, Jens

Journal:

Year:

2013

Language:

english

File:

PDF, 2.50 MB

english, 2013

20

Improved PEP-FOLD Approach for Peptide and Miniprotein Structure Prediction

Shen, Yimin, Maupetit, Julien, Derreumaux, Philippe, Tufféry, Pierre

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 4.37 MB

english, 2014

21

Small-scale high-throughput sequencing–based identification of new therapeutic tools in cystic fibrosis

Bonini, Jennifer, Varilh, Jessica, Raynal, Caroline, Thèze, Corinne, Beyne, Emmanuelle, Audrezet, Marie-Pierre, Ferec, Claude, Bienvenu, Thierry, Girodon, Emmanuelle, Tuffery-Giraud, Sylvie, Des Georg

Journal:

Genetics in Medicine

Year:

2015

Language:

english

File:

PDF, 5.03 MB

english, 2015

22

Interfering peptides targeting protein–protein interactions: the next generation of drugs?

Bruzzoni-Giovanelli, Heriberto, Alezra, Valerie, Wolff, Nicolas, Dong, Chang-Zhi, Tuffery, Pierre, Rebollo, Angelita

Journal:

Drug Discovery Today

Year:

2017

Language:

english

File:

PDF, 937 KB

english, 2017

23

Mutation analysis of the dystrophin gene in Southern French DMD or BMD families: from Southern blot to protein truncation test

Sylvie Tuffery, Sylvie Chambert, Corinne Bareil, Pierre Sarda, Christine Coubes, Bernard Echenne, Jacques Demaille, M. Claustres

Journal:

Year:

1998

Language:

english

File:

PDF, 136 KB

english, 1998

24

Enhanced protein fold recognition using a structural alphabet

Patrick Deschavanne, Pierre Tufféry

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 227 KB

english, 2009

25

Relative Local Convexity Approaches for Accessibility Studies of Molecular Regions

Ann Badel-Chagnon, Pierre Tuffery, Serge Hazout, Paul G. Mezey

Journal:

Molecular Engineering

Year:

1998

Language:

english

File:

PDF, 263 KB

english, 1998

26

Becker muscular dystrophy: Demonstration of the carrier status of a female by immunoblotting and immunostaining

Chevron, Marie-Pierre, Tuffery, Sylvie, Echenne, Bernard, Demaille, Jacques, Claustres, Mireille

Journal:

Neuromuscular Disorders

Year:

1992

Language:

english

File:

PDF, 396 KB

english, 1992

27

Multiexon skipping leading to an artificial DMD protein lacking amino acids from exons 45 through 55 could rescue up to 63% of patients with Duchenne muscular dystrophy

Christophe Béroud, Sylvie Tuffery-Giraud, Masafumi Matsuo, Dalil Hamroun, Véronique Humbertclaude, Nicole Monnier, Marie-Pierre Moizard, Marie-Antoinette Voelckel, Laurence Michel Calemard, Pierre Boi

Journal:

Year:

2007

Language:

english

File:

PDF, 292 KB

english, 2007

28

Modelling of transmembrane α-helix bundles

Pierre Tufféry, Catherine Etchebest, Richard Lavery

Journal:

Molecular Engineering

Year:

1995

Language:

english

File:

PDF, 610 KB

english, 1995

29

aes, the gene encoding the esterase B inEscherichia coli, is a powerful phylogenetic marker of the species

Mathilde Lescat, Claire Hoede, Olivier Clermont, Louis Garry, Pierre Darlu, Pierre Tuffery, Erick Denamur, Bertrand Picard

Journal:

BMC Microbiology

Year:

2009

Language:

english

File:

PDF, 513 KB

english, 2009

30

InterEvDock: a docking server to predict the structure of protein–protein interactions using evolutionary information

Yu, Jinchao, Vavrusa, Marek, Andreani, Jessica, Rey, Julien, Tufféry, Pierre, Guerois, Raphaël

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.72 MB

english, 2016

31

In silico structural characterization of protein targets for drug development againstTrypanosoma cruzi

Lima, Carlyle Ribeiro, Carels, Nicolas, Guimaraes, Ana Carolina Ramos, Tufféry, Pierre, Derreumaux, Philippe

Journal:

Journal of Molecular Modeling

Year:

2016

Language:

english

File:

PDF, 3.31 MB

english, 2016

32

Probing the quality control mechanism of the Escherichia coli twin-arginine translocase with folding variants of a de novo -designed heme protein

Sutherland, George A., Grayson, Katie J., Adams, Nathan B P, Mermans, Daphne M. J., Jones, Alexander S., Robertson, Angus J., Auman, Dirk B., Brindley, Amanda A., Sterpone, Fabio, Tuffery, Pierre, Der

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 1.30 MB

english, 2018

33

Packing and recognition of protein structural elements: A new approach applied to the 4-helix bundle of myohemerythrin

Dr. Pierre Tufféry, Richard Lavery

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1993

Language:

english

File:

PDF, 1.22 MB

english, 1993

34

Protease profiling of liver fibrosis reveals the ADAM metallopeptidase with thrombospondin type 1 motif, 1 as a central activator of transforming growth factor beta

Katia Bourd-Boittin, Dominique Bonnier, Anthony Leyme, Bernard Mari, Pierre Tuffery, Michel Samson, Frédéric Ezan, Georges Baffet, Nathalie Theret

Journal:

Year:

2011

Language:

english

File:

PDF, 1.95 MB

english, 2011

35

Fpocket: An open source platform for ligand pocket detection

Vincent Le Guilloux, Peter Schmidtke, Pierre Tuffery

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.24 MB

english, 2009

36

PatchSearch: a web server for off-target protein identification

Rey, Julien, Rasolohery, Inès, Tufféry, Pierre, Guyon, Frédéric, Moroy, Gautier

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 3.09 MB

english, 2019

37

Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity

Flavien Quintus, Olivier Sperandio, Julien Grynberg, Michel Petitjean, Pierre Tuffery

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.51 MB

english, 2009

38

BCSearch: fast structural fragment mining over large collections of protein structures

Guyon, Frédéric, Martz, François, Vavrusa, Marek, Bécot, Jérôme, Rey, Julien, Tufféry, Pierre

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

39

Missense Mutations in SLC26A8, Encoding a Sperm-Specific Activator of CFTR, Are Associated with Human Asthenozoospermia

Dirami, Thassadite, Rode, Baptiste, Jollivet, Mathilde, Da Silva, Nathalie, Escalier, Denise, Gaitch, Natacha, Norez, Caroline, Tuffery, Pierre, Wolf, Jean-Philippe, Becq, Frédéric, Ray, Pierre F., Du

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 610 KB

english, 2013

40

A Free Web-Based Protocol to Assist Structure-Based Virtual Screening Experiments

Lagarde, Nathalie, Goldwaser, Elodie, Pencheva, Tania, Jereva, Dessislava, Pajeva, Ilza, Rey, Julien, Tuffery, Pierre, Villoutreix, Bruno O., Miteva, Maria A.

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 2.14 MB

english, 2019

41

A Free Web-Based Protocol to Assist Structure-Based Virtual Screening Experiments

Lagarde, Nathalie, Goldwaser, Elodie, Pencheva, Tania, Jereva, Dessislava, Pajeva, Ilza, Rey, Julien, Tuffery, Pierre, Villoutreix, Bruno O., Miteva, Maria A.

Journal:

International Journal of Molecular Sciences

Year:

2019

File:

PDF, 2.14 MB

2019

42

Molecular deletion patterns in families from southern France with Duchenne/Becker muscular dystrophies

Mireille Claustres, Sylvie Tuffery, Marie-Pierre Chevron, Marie-Pierre Jozelon, Patricia Martinez, Bernard Echenne, Jacques Demaille

Journal:

Year:

1991

Language:

english

File:

PDF, 679 KB

english, 1991

43

InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs

Quignot, Chloé, Rey, Julien, Yu, Jinchao, Tufféry, Pierre, Guerois, Raphaël, Andreani, Jessica

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.47 MB

english, 2018

44

DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins

Karami, Yasaman, Guyon, Frédéric, De Vries, Sjoerd, Tufféry, Pierre

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.84 MB

english, 2018

45

Lys53 of Ribosomal Protein L36AL and the CCA End of a tRNA at the P/E Hybrid Site Are in Close Proximity on the Human Ribosome

Prof. Codjo Hountondji, Dr. Konstantin Bulygin, Dr. Anne Woisard, Dr. Pierre Tuffery, Dr. Jean-Bernard Créchet, Dr. Markus Pech, Prof. Dr. Knud H. Nierhaus, Prof. Galina Karpova, Dr. Soria Baouz

Journal:

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

46

A Model for the Photosystem II Reaction Center Core Including the Structure of the Primary Donor P 680†,‡

Svensson, Bengt, Etchebest, Catherine, Tuffery, Pierre, van Kan, Paul, Smith, Jeremy, Styring, Stenbjörn

Journal:

Year:

1996

Language:

english

File:

PDF, 711 KB

english, 1996

47

The pepATTRACT web server for blind, large-scale peptide–protein docking

de Vries, Sjoerd J., Rey, Julien, Schindler, Christina E. M., Zacharias, Martin, Tuffery, Pierre

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 919 KB

english, 2017

48

Online structure-based screening of purchasable approved drugs and natural compounds: retrospective examples of drug repositioning on cancer targets

Lagarde, Nathalie, Rey, Julien, Gyulkhandanyan, Aram, Tufféry, Pierre, Miteva, Maria A., Villoutreix, Bruno O.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.70 MB

english, 2018

49

PatchSearch: a web server for off-target protein identification

Rey, Julien, Rasolohery, Inès, Tufféry, Pierre, Guyon, Frédéric, Moroy, Gautier

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 3.09 MB

2019

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